Basic Information
Locus ID:
evm.TU.LG10.843
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
serine threonine-protein kinase cdc7
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 11950816 | 11972412 | - | evm.TU.LG10.843 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 258,140.61 Da | 46.08 | 79.35 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18095 | SpoU-like_rRNA-MTase | 198 | 323 | 1.11242E-32 | - |
| CDD | cd10545 | SET_AtSUVH-like | 2092 | 2319 | 2.90919E-122 | - |
| Pfam | PF05033 | Pre-SET motif | 2071 | 2167 | 8.1E-20 | IPR007728 |
| Pfam | PF00588 | SpoU rRNA Methylase family | 199 | 325 | 1.8E-15 | IPR001537 |
| Pfam | PF00069 | Protein kinase domain | 825 | 974 | 2.2E-23 | IPR000719 |
| Pfam | PF00856 | SET domain | 2186 | 2318 | 2.1E-21 | IPR001214 |
| Pfam | PF00069 | Protein kinase domain | 1151 | 1288 | 1.8E-17 | IPR000719 |
| Pfam | PF02182 | SAD/SRA domain | 1888 | 2046 | 9.6E-49 | IPR003105 |
| SUPERFAMILY | SSF75217 | alpha/beta knot | 193 | 325 | 4.84E-17 | IPR029028 |
| SUPERFAMILY | SSF88697 | PUA domain-like | 1875 | 2055 | 5.22E-58 | IPR015947 |
| SUPERFAMILY | SSF82199 | SET domain | 2058 | 2321 | 9.16E-78 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 821 | 1303 | 1.97E-57 | IPR011009 |
| SUPERFAMILY | SSF55315 | L30e-like | 69 | 166 | 1.22E-10 | IPR029064 |
| Gene3D | G3DSA:3.40.1280.10 | - | 195 | 332 | 9.1E-23 | IPR029026 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1128 | 1309 | 3.1E-29 | - |
| Gene3D | G3DSA:2.170.270.10 | SET domain | 2063 | 2334 | 4.4E-94 | - |
| Gene3D | G3DSA:3.30.1330.30 | - | 68 | 173 | 5.5E-10 | IPR029064 |
| Gene3D | G3DSA:2.30.280.10 | - | 1873 | 2062 | 1.0E-61 | IPR036987 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 798 | 994 | 1.9E-26 | - |
| SMART | SM00317 | set_7 | 2175 | 2324 | 2.4E-44 | IPR001214 |
| SMART | SM00220 | serkin_6 | 823 | 1288 | 1.7E-46 | IPR000719 |
| SMART | SM00466 | G9a_1 | 1884 | 2046 | 1.1E-71 | IPR003105 |
| SMART | SM00468 | preset_2 | 2068 | 2159 | 7.4E-33 | IPR007728 |
| ProSiteProfiles | PS50867 | Pre-SET domain profile. | 2112 | 2172 | 12.134783 | IPR007728 |
| ProSiteProfiles | PS51015 | YDG domain profile. | 1889 | 2042 | 52.661301 | IPR003105 |
| ProSiteProfiles | PS51575 | Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. | 1737 | 2336 | 163.343674 | IPR025794 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 823 | 1288 | 32.96545 | IPR000719 |
| ProSiteProfiles | PS50280 | SET domain profile. | 2175 | 2318 | 19.799034 | IPR001214 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 935 | 947 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1633 | 1647 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 802 | 822 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 970 | 1006 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 65 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 763 | 785 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1046 | 1061 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 737 | 751 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 725 | 751 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 972 | 997 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1746 | 1800 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 763 | 784 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1746 | 1790 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1604 | 1647 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 802 | 823 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1046 | 1069 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22740.1 | SU(VAR)3-9 homolog 6. Encodes a SU(VAR)3-9 homolog, a methyltransferase involved in histone methylation. The protein was shown to bind to methylated cytosines of CG, CNG and CNN motifs but has a preference for the latter two. This is a member of a subfamily of SET proteins that shares a conserved SRA domain. | 0 |
| RefSeq | XP_010672907.1 | histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8VZ17 | Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 OS=Arabidopsis thaliana OX=3702 GN=SUVH6 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9QBR8 | Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 OS=Spinacia oleracea OX=3562 GN=SOVF_197230 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg4911 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2035 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004112 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g105160 |
| Amaranthaceae | Salicornia bigelovii | 8 | Sbi_jg38973, Sbi_jg38974, Sbi_jg38980, Sbi_jg38983 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg10844, Seu_jg11932 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010824 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51157, Sgl56461 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000004661 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5BG0004130 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30141930 |
| Apiaceae | Apium graveolens | 1 | Ag7G00179 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G004860 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710813 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.3178.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G15921 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G16970.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024346m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g17210.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g019340.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0006 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G0010, Cgl03G0016 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g04190 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g05240 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1129 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004126 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G08589 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.2882, BH01.3224, CH01.3452 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0116910, gene-QOZ80_2BG0170630 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0057620.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_009958, gene-QYE76_012693 |
| Poaceae | Oryza coarctata | 2 | Oco19G010360, Oco20G010180 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g41390.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G283300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0503224, Pt_Chr0503269 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr09G005220, Chr13G019640, Chr15G018860 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G368600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG032820, gene_TRIDC1BG038100 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G217400.1, TraesCS1B02G230600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb023800_P001, Zm00001eb391030_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12926 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.843, evm.TU.LG17.840 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc02g09540, gene.Posoc05g10880, gene.Posoc09g09320 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.412 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17958 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-8315, nbisL1-mrna-8316 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000007l.126 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018437 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16178 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10679 |
| Salicaceae | Populus euphratica | 2 | populus_peu03062, populus_peu33941 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635174 |
| Solanaceae | Solanum chilense | 1 | SOLCI006593700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026764 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14891 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2782 |
| Zosteraceae | Zostera marina | 1 | Zosma01g35870.v3.1 |