Basic Information
Locus ID:
evm.TU.LG10.788
Species & Taxonomic ID:
Nitraria sibirica & 357931
Short Name:
RDR2
Description:
Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 19634405 | 19639010 | - | evm.TU.LG10.788 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.14 | 129,215.15 Da | 40.63 | 86.86 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05183 | RNA dependent RNA polymerase | 393 | 971 | 2.8E-175 | IPR007855 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 4 | 87 | 5.04E-8 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 107 | 2.2E-7 | IPR012677 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 8 | 91 | 10.104358 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11130.1 | RNA-dependent RNA polymerase 2. Encodes RNA-dependent RNA polymerase that is required for endogenous siRNA (but not miRNA) formation. Nomenclature according to Xie, et al. (2004). | 0 |
| RefSeq | XP_024044911.1 | RNA-dependent RNA polymerase 2 [Citrus clementina] | 0 |
| O82504 | RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7H0H2 | RNA-dependent RNA polymerase OS=Acer yangbiense OX=1000413 GN=EZV62_022833 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology