Basic Information
Locus ID:
evm.TU.LG10.774
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 10658157 | 10710179 | - | evm.TU.LG10.774 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 360,552.59 Da | 41.00 | 87.18 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 2592 | 2676 | 1.46524E-5 | - |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 575 | 798 | 3.5E-32 | IPR031642 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 115 | 1.7E-30 | IPR026854 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2192 | 2334 | 1.0E-9 | IPR009291 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 136 | 380 | 7.1E-67 | IPR031646 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 2581 | 2738 | 2.4E-6 | IPR035892 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_010679514.1 | uncharacterized protein LOC104894866 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RFD4 | C2 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_073140 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology