Basic Information
Locus ID:
evm.TU.LG10.773
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 10645953 | 10647134 | - | evm.TU.LG10.773 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.28 | 45,259.67 Da | 40.62 | 93.41 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 17 | 54 | 7.9E-10 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 239 | 321 | 2.9E-6 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 12 | 68 | 1.96E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 54 | 5.4E-7 | - |
| SMART | SM00256 | fbox_2 | 18 | 58 | 2.9E-8 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 119 | 341 | 6.2E-19 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 12 | 62 | 10.239312 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23880.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_021733536.1 | F-box protein CPR30-like [Chenopodium quinoa] | 0 |
| Q9LIR8 | F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana OX=3702 GN=At3g23880 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C8YGP6 | F-box domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 1 | Ag10G01150 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2813 |
| Portulacaceae | Portulaca oleracea | 14 | evm.TU.LG04.2967, evm.TU.LG04.3108, evm.TU.LG10.771 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | MSTRG.19897_chr11_+ |