Basic Information
Locus ID:
evm.TU.LG10.698
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 18383274 | 18384500 | + | evm.TU.LG10.698 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 47,273.14 Da | 38.96 | 85.00 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 24 | 69 | 7.6E-6 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 234 | 306 | 2.2E-6 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 23 | 80 | 1.57E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 20 | 74 | 1.6E-8 | - |
| SMART | SM00256 | fbox_2 | 26 | 67 | 0.0015 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 118 | 314 | 4.1E-18 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 20 | 72 | 10.292301 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_050243823.1 | F-box protein At5g49610-like [Quercus robur] | 0 |
| TrEMBL | A0A7N2M4Q7 | F-box domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 3 | pistato.v30285360, pistato.v30285370, pistato.v30285390 |
| Apiaceae | Apium graveolens | 3 | Ag5G00177, Ag8G00115, Ag8G00116 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.1075, evm.TU.LG10.698 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1762 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-5563 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1417 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18724 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13722 |
| Solanaceae | Solanum chilense | 3 | SOLCI001505700, SOLCI003744300, SOLCI006902700 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107029936, gene-LOC107029937, gene-LOC114076361 |