Basic Information
Locus ID:
evm.TU.LG10.683
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 18170990 | 18174810 | + | evm.TU.LG10.683 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 53,114.01 Da | 48.04 | 69.21 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 24 | 331 | 0.0 | - |
| Pfam | PF00850 | Histone deacetylase domain | 38 | 329 | 4.9E-86 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 19 | 384 | 2.25E-123 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 17 | 392 | 1.8E-136 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 4 | 466 | 2.1E-204 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 168 | 184 | 8.7E-62 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 73 | 91 | 8.7E-62 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 244 | 262 | 8.7E-62 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 227 | 240 | 8.7E-62 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 40 | 57 | 8.7E-62 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 106 | 123 | 8.7E-62 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 149 | 172 | 2.0E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 181 | 196 | 2.0E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 127 | 147 | 8.7E-62 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 266 | 276 | 2.0E-24 | IPR000286 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 405 | 424 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 445 | 469 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 399 | 469 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_031261433.1 | histone deacetylase 6-like [Pistacia vera] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 | |
| TrEMBL | V4TTD6 | Histone deacetylase OS=Citrus clementina OX=85681 GN=CICLE_v10020048mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology