Basic Information
Locus ID:
evm.TU.LG10.66
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Zinc finger protein VAR3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 3432798 | 3438594 | - | evm.TU.LG10.66 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 48,360.72 Da | 44.19 | 64.77 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 384 | 410 | 1.5E-4 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 349 | 372 | 4.0E-8 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 272 | 295 | 1.8E-6 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 310 | 338 | 3.0E-10 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 302 | 336 | 1.1E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 378 | 412 | 1.88E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 266 | 299 | 3.18E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 346 | 378 | 5.3E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 303 | 340 | 3.1E-14 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 341 | 379 | 3.0E-14 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 380 | 412 | 1.3E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 263 | 301 | 4.4E-14 | - |
| SMART | SM00547 | zf_4 | 384 | 408 | 1.5E-4 | IPR001876 |
| SMART | SM00547 | zf_4 | 351 | 375 | 2.2E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 312 | 336 | 1.1E-7 | IPR001876 |
| SMART | SM00547 | zf_4 | 273 | 297 | 1.7E-5 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 382 | 411 | 10.127614 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 271 | 300 | 9.563004 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 310 | 339 | 10.488965 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 349 | 378 | 10.635763 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 353 | 372 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 386 | 405 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 314 | 333 | - | IPR001876 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_044476202.1 | zinc finger protein VAR3, chloroplastic [Mangifera indica] | 0 |
| TrEMBL | A0A5C7H1J2 | Zinc finger protein VAR3, chloroplastic OS=Acer yangbiense OX=1000413 GN=EZV62_023384 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology