Basic Information
Locus ID:
evm.TU.LG10.639
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 17602310 | 17603854 | + | evm.TU.LG10.639 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.71 | 52,890.47 Da | 30.58 | 97.68 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 54 | 102 | 4.0E-14 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 123 | 172 | 3.7E-15 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 263 | 311 | 3.2E-18 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 404 | 422 | 0.31 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 193 | 241 | 4.5E-17 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 332 | 381 | 8.5E-16 | IPR002885 |
| SUPERFAMILY | SSF81901 | HCP-like | 5 | 322 | 3.4E-10 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 362 | 472 | 2.2E-17 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 148 | 224 | 1.3E-23 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 225 | 288 | 8.8E-22 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 289 | 361 | 4.0E-26 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1 | 147 | 4.3E-37 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 300 | 334 | 1.7E-10 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 56 | 90 | 2.9E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 335 | 369 | 8.5E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 22 | 55 | 5.6E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 230 | 263 | 8.5E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 126 | 160 | 3.4E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 197 | 225 | 2.7E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 91 | 124 | 2.2E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 265 | 299 | 1.0E-11 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 161 | 195 | 3.1E-7 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 124 | 158 | 11.191545 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 54 | 88 | 13.044004 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 89 | 123 | 10.742131 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 298 | 332 | 13.252269 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 194 | 224 | 11.114816 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 159 | 193 | 12.309597 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 333 | 367 | 12.024604 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 263 | 297 | 13.800334 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 228 | 262 | 12.145178 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_044485156.1 | pentatricopeptide repeat-containing protein At5g61400 isoform X2 [Mangifera indica] | 0 |
| TrEMBL | A0A2H5PSG7 | Pentatricopeptide repeat-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_163340 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg25739 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g114320 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg31086, Sbi_jg31087, Sbi_jg58186 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25800 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004663 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000006569, gene:ENSEOMG00000021586 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5BG0021750 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30144380 |
| Apiaceae | Apium graveolens | 1 | Ag10G02920 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.3138.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri2G25377 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G61400.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005336m.g.v1.0 |
| Brassicaceae | Brassica nigra | 1 | BniB07g041170.2N |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.639 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00011897 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G01801, Lb2G14045, Lb2G14046 |
| Poaceae | Echinochloa crus-galli | 1 | CH02.2277 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0534900, gene-QOZ80_6BG0488090 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0484770.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_005089 |
| Poaceae | Oryza coarctata | 2 | Oco17G004930, Oco18G004970 |
| Poaceae | Oryza sativa | 2 | LOC_Os09g25050.1, LOC_Os10g15160.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G072400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0702222, Pt_Chr0702237 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr10G010270, Chr14G013680, Chr21G012810 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G374300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG036520, gene_TRIDC5BG038530 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G229600.1.cds1, TraesCS5B02G228400.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb312410_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30868 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30296 |
| Posidoniaceae | Posidonia oceanica | 8 | gene.Posoc01g24530, gene.Posoc02g11950, gene.Posoc02g15500 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-28766, nbisL1-mrna-28767, nbisL1-mrna-28772 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11264 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1755 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000008l.139 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000224 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-22610 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1570 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600546 |
| Solanaceae | Solanum chilense | 1 | SOLCI005511700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021578 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10187 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2365 |