Basic Information
Locus ID:
evm.TU.LG10.600
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 17041441 | 17049387 | - | evm.TU.LG10.600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.97 | 28,012.03 Da | 59.14 | 83.10 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 48 | 87 | 3.4E-7 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 42 | 105 | 1.17E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 37 | 141 | 2.5E-12 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 48 | 103 | 10.232069 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 67 | 76 | - | IPR017907 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G29270.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_044485349.1 | uncharacterized protein LOC123210917 [Mangifera indica] | 0 |
| TrEMBL | A0A1R3G4K1 | Zinc finger, RING/FYVE/PHD-type OS=Corchorus olitorius OX=93759 GN=COLO4_36874 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology