Basic Information
Locus ID:
evm.TU.LG10.446
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 14547873 | 14553042 | - | evm.TU.LG10.446 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.77 | 29,695.45 Da | 37.44 | 89.96 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 206 | 268 | 1.8146E-20 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 205 | 267 | 1.2E-15 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 130 | 191 | 7.9E-10 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 125 | 268 | 4.67E-40 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 119 | 223 | 8.8E-28 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 224 | 276 | 3.6E-15 | - |
| SMART | SM00054 | efh_1 | 206 | 234 | 5.7E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 242 | 270 | 7.0E-8 | IPR002048 |
| SMART | SM00054 | efh_1 | 167 | 195 | 0.5 | IPR002048 |
| SMART | SM00054 | efh_1 | 131 | 159 | 0.011 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 127 | 162 | 13.258112 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 202 | 237 | 14.569197 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 238 | 273 | 14.122869 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 163 | 198 | 10.859108 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 251 | 263 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 140 | 152 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 176 | 188 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 215 | 227 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_006440879.1 | probable calcium-binding protein CML15 [Citrus clementina] | 0 |
| Q9LI84 | Probable calcium-binding protein CML16 OS=Arabidopsis thaliana OX=3702 GN=CML16 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6A6LFR3 | Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_028346 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology