Basic Information
Locus ID:
evm.TU.LG10.371
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Proteinaceous RNase P 1, chloroplastic
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 12707895 | 12721977 | + | evm.TU.LG10.371 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.55 | 111,856.90 Da | 43.85 | 82.34 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 522 | 732 | 1.5E-80 | IPR033443 |
| Pfam | PF00153 | Mitochondrial carrier protein | 8 | 94 | 9.9E-13 | IPR018108 |
| Pfam | PF16953 | Protein-only RNase P | 773 | 1000 | 2.1E-74 | IPR031595 |
| SUPERFAMILY | SSF103506 | Mitochondrial carrier | 9 | 310 | 8.24E-37 | IPR023395 |
| Gene3D | G3DSA:3.40.50.11980 | - | 791 | 966 | 1.2E-239 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 530 | 1003 | 1.2E-239 | IPR011990 |
| Gene3D | G3DSA:1.50.40.10 | Mitochondrial carrier domain | 3 | 322 | 2.3E-37 | IPR023395 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 610 | 644 | 9.426776 | IPR002885 |
| ProSiteProfiles | PS50920 | Solute carrier (Solcar) repeat profile. | 6 | 92 | 14.403738 | IPR018108 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 511 | 532 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32230.1 | proteinaceous RNase P 1. RNase P able to cleave tRNA-like structures involved in the maturation of plant mitochondrial mRNAs. | 0 |
| RefSeq | XP_006437491.1 | proteinaceous RNase P 1, chloroplastic/mitochondrial [Citrus clementina] | 0 |
| Q66GI4 | Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PRORP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4Y1QR46 | ribonuclease P (Fragment) OS=Prunus dulcis OX=3755 GN=Prudu_002587 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology