Basic Information
Locus ID:
evm.TU.LG10.355
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
E3 ubiquitin ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 12367448 | 12371072 | + | evm.TU.LG10.355 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.05 | 31,853.25 Da | 52.23 | 59.31 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 132 | 207 | 3.2E-13 | IPR008913 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 127 | 188 | 2.09E-9 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 200 | 243 | 5.42E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 195 | 274 | 2.3E-8 | IPR013083 |
| SMART | SM00184 | ring_2 | 202 | 239 | 6.5E-5 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 125 | 194 | 20.309771 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 202 | 239 | 10.438611 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_044467199.1 | zinc finger protein BRUTUS isoform X3 [Mangifera indica] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2KCF0 | RING-type domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS58174 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology