Basic Information
Locus ID:
evm.TU.LG10.350
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
DDB1- and CUL4-associated factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 4100161 | 4118111 | + | evm.TU.LG10.350 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 115,749.00 Da | 45.56 | 81.87 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 202 | 503 | 4.22438E-41 | - |
| CDD | cd00223 | TOPRIM_TopoIIB_SPO | 854 | 1011 | 1.28346E-54 | IPR034136 |
| Pfam | PF00400 | WD domain, G-beta repeat | 426 | 459 | 0.0022 | IPR001680 |
| Pfam | PF04158 | Sof1-like domain | 504 | 583 | 1.4E-28 | IPR007287 |
| Pfam | PF00400 | WD domain, G-beta repeat | 205 | 238 | 0.0018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 247 | 280 | 2.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 474 | 503 | 4.0E-4 | IPR001680 |
| Pfam | PF04406 | Type IIB DNA topoisomerase | 738 | 803 | 1.8E-17 | IPR013049 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 180 | 503 | 1.24E-57 | IPR036322 |
| SUPERFAMILY | SSF56726 | DNA topoisomerase IV, alpha subunit | 737 | 1026 | 2.75E-78 | IPR036078 |
| Gene3D | G3DSA:3.40.1360.10 | - | 807 | 1026 | 1.4E-60 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 286 | 533 | 3.0E-34 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 166 | 284 | 6.7E-22 | IPR015943 |
| Gene3D | G3DSA:1.10.10.10 | - | 660 | 806 | 3.3E-25 | IPR036388 |
| SMART | SM00320 | WD40_4 | 335 | 375 | 3.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 462 | 503 | 8.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 198 | 238 | 4.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 241 | 280 | 8.1E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 421 | 460 | 8.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 378 | 417 | 320.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 248 | 281 | 10.706503 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 471 | 512 | 10.475033 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 248 | 289 | 12.947979 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 205 | 239 | 10.442869 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 428 | 459 | 8.887423 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 342 | 384 | 8.770704 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 205 | 247 | 13.014815 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 428 | 459 | 10.575287 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 225 | 239 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 267 | 281 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 267 | 281 | 2.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 490 | 504 | 2.9E-5 | IPR020472 |
| PRINTS | PR01550 | DNA topoisomerase VI subunit A family signature | 856 | 873 | 6.5E-30 | IPR002815 |
| PRINTS | PR01550 | DNA topoisomerase VI subunit A family signature | 780 | 797 | 6.5E-30 | IPR002815 |
| PRINTS | PR01550 | DNA topoisomerase VI subunit A family signature | 798 | 813 | 6.5E-30 | IPR002815 |
| PRINTS | PR01550 | DNA topoisomerase VI subunit A family signature | 913 | 929 | 6.5E-30 | IPR002815 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 225 | 239 | 2.9E-5 | IPR020472 |
| PRINTS | PR01550 | DNA topoisomerase VI subunit A family signature | 880 | 901 | 6.5E-30 | IPR002815 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 559 | 580 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 559 | 577 | - | - |
| Coils | Coil | Coil | 553 | 573 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28450.1 | nucleotide binding;protein binding. This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | 0 |
| RefSeq | XP_010689793.2 | DDB1- and CUL4-associated factor 13 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9M4A1 | Meiotic recombination protein SPO11-2 OS=Arabidopsis thaliana OX=3702 GN=SPO11-2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9A671 | DDB1- and CUL4-associated factor 13 OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19353 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25909 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah029207 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g209700 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11749, Sbi_jg46661 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20986 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00029039 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl79894, Sgl82354 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007589, gene:ENSEOMG00000036398 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0011870, CQ.Regalona.r1.7BG0013940 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30020300 |
| Apiaceae | Apium graveolens | 1 | AgUnG00089 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G002350 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715202 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.1096.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G13478 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G28450.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025176m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g26430.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g083540.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2691 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2787 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g03520 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0025s00044.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate09g08450, gene.Thate09g08480, gene.Thate09g08580 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1790 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004582 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G20086 |
| Poaceae | Echinochloa crus-galli | 2 | AH02.45, CH02.39 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0000300, gene-QOZ80_1BG0048750 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0250210.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_051675 |
| Poaceae | Oryza coarctata | 2 | Oco01G006280, Oco02G006380 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g13730.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G002300, gene-BS78_K047000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0204803 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr23G000840, Chr26G018440 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G286400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG021970, gene_TRIDC3BG025980 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G160900.1, TraesCS3B02G191500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb064830_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-32750 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7161 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.350, evm.TU.LG17.346 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g04530 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_18_RagTag.444 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-28066 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2647 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7875 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000023l.187 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018788 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7292 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21220 |
| Salicaceae | Populus euphratica | 2 | populus_peu22520, populus_peu23921 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132618660, gene-LOC132633202 |
| Solanaceae | Solanum chilense | 1 | SOLCI005019500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024119 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6808 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0503 |
| Zosteraceae | Zostera marina | 1 | Zosma03g02810.v3.1 |