Basic Information
Locus ID:
evm.TU.LG10.335
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 11939514 | 11947765 | - | evm.TU.LG10.335 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.77 | 57,209.40 Da | 56.50 | 77.33 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 327 | 502 | 9.30353E-107 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 326 | 431 | 4.7E-17 | IPR000555 |
| Pfam | PF08969 | USP8 dimerisation domain | 9 | 99 | 2.6E-13 | IPR015063 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 327 | 458 | 3.53E-20 | - |
| SUPERFAMILY | SSF140856 | USP8 N-terminal domain-like | 22 | 110 | 5.75E-5 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 307 | 502 | 1.1E-69 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 2 | 118 | 2.2E-29 | - |
| SMART | SM00232 | pad1_6 | 327 | 455 | 6.9E-19 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 328 | 458 | 30.844269 | IPR037518 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_031277668.1 | AMSH-like ubiquitin thioesterase 1 [Pistacia vera] | 0 |
| Q8VYB5 | AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana OX=3702 GN=AMSH1 PE=2 SV=1 | 0 | |
| TrEMBL | V4U145 | MPN domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10019782mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology