Basic Information
Locus ID:
evm.TU.LG10.333
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 11914201 | 11923482 | + | evm.TU.LG10.333 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 139,787.27 Da | 49.56 | 78.17 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16464 | RING-H2_Pirh2 | 1111 | 1154 | 1.24538E-15 | - |
| CDD | cd12108 | Hr-like | 298 | 426 | 9.83199E-17 | - |
| CDD | cd12108 | Hr-like | 39 | 165 | 4.64715E-29 | - |
| CDD | cd12108 | Hr-like | 645 | 805 | 1.85958E-28 | - |
| Pfam | PF13639 | Ring finger domain | 1111 | 1153 | 3.6E-8 | IPR001841 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 45 | 168 | 1.3E-9 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 643 | 806 | 3.4E-8 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 983 | 1058 | 7.3E-19 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 1159 | 1216 | 4.0E-22 | IPR039512 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1111 | 1157 | 3.21E-9 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 978 | 1039 | 4.05E-16 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1049 | 1104 | 1.83E-15 | IPR037275 |
| Gene3D | G3DSA:2.20.28.10 | - | 1182 | 1226 | 3.8E-16 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 640 | 868 | 9.3E-24 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1105 | 1156 | 2.4E-10 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 300 | 444 | 3.3E-16 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 36 | 186 | 7.2E-26 | - |
| SMART | SM00184 | ring_2 | 1112 | 1153 | 2.0E-6 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 976 | 1045 | 24.718321 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1112 | 1154 | 11.618851 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1048 | 1111 | 27.991467 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_031278576.1 | zinc finger protein BRUTUS [Pistacia vera] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J1AYM9 | zinc finger protein BRUTUS isoform X1 OS=Herrania umbratica OX=108875 GN=LOC110422476 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology