Basic Information
Locus ID:
evm.TU.LG10.1537
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 27316803 | 27323948 | - | evm.TU.LG10.1537 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.99 | 64,356.03 Da | 57.42 | 73.00 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 530 | 573 | 6.49218E-17 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 241 | 307 | 2.1E-16 | IPR025287 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 26 | 98 | 1.3E-14 | IPR025287 |
| Pfam | PF13639 | Ring finger domain | 529 | 573 | 8.4E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 523 | 575 | 9.72E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 499 | 578 | 2.5E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 531 | 572 | 9.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 531 | 573 | 12.769585 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_031280942.1 | RING-H2 finger protein ATL20-like [Pistacia vera] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | A0A5N6R5M2 | RING-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_012015 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology