Basic Information
Locus ID:
evm.TU.LG10.1534
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 27295806 | 27297890 | - | evm.TU.LG10.1534 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 41,337.66 Da | 50.57 | 80.78 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 323 | 366 | 7.22455E-19 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 29 | 96 | 3.1E-17 | IPR025287 |
| Pfam | PF13639 | Ring finger domain | 322 | 366 | 5.7E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 318 | 368 | 2.47E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 291 | 370 | 4.9E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 324 | 365 | 5.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 324 | 366 | 12.607302 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_031280942.1 | RING-H2 finger protein ATL20-like [Pistacia vera] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | A0A5C7H108 | RING-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_023188 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology