Basic Information
Locus ID:
evm.TU.LG10.1462
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 26640076 | 26652689 | - | evm.TU.LG10.1462 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 155,854.95 Da | 56.22 | 70.65 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00018 | AP2 | 1027 | 1083 | 1.13079E-24 | IPR001471 |
| CDD | cd16650 | SP-RING_PIAS_like | 317 | 363 | 4.29579E-25 | - |
| CDD | cd00018 | AP2 | 1377 | 1435 | 1.14535E-26 | IPR001471 |
| CDD | cd00018 | AP2 | 1153 | 1210 | 6.073E-13 | IPR001471 |
| Pfam | PF02891 | MIZ/SP-RING zinc finger | 316 | 364 | 2.2E-21 | IPR004181 |
| Pfam | PF00847 | AP2 domain | 1280 | 1327 | 1.4E-10 | IPR001471 |
| Pfam | PF00847 | AP2 domain | 901 | 948 | 1.2E-11 | IPR001471 |
| Pfam | PF00847 | AP2 domain | 1377 | 1425 | 2.1E-10 | IPR001471 |
| Pfam | PF00847 | AP2 domain | 1026 | 1073 | 4.2E-10 | IPR001471 |
| Pfam | PF00847 | AP2 domain | 1153 | 1200 | 8.4E-13 | IPR001471 |
| SUPERFAMILY | SSF54171 | DNA-binding domain | 1153 | 1209 | 4.32E-16 | IPR016177 |
| SUPERFAMILY | SSF54171 | DNA-binding domain | 1280 | 1336 | 5.82E-16 | IPR016177 |
| SUPERFAMILY | SSF54171 | DNA-binding domain | 902 | 957 | 2.62E-17 | IPR016177 |
| SUPERFAMILY | SSF54171 | DNA-binding domain | 1378 | 1434 | 5.04E-17 | IPR016177 |
| SUPERFAMILY | SSF54171 | DNA-binding domain | 1026 | 1083 | 3.86E-18 | IPR016177 |
| Gene3D | G3DSA:3.30.730.10 | AP2/ERF domain | 1279 | 1337 | 3.7E-21 | IPR036955 |
| Gene3D | G3DSA:3.30.730.10 | AP2/ERF domain | 1377 | 1435 | 1.1E-23 | IPR036955 |
| Gene3D | G3DSA:3.30.730.10 | AP2/ERF domain | 1152 | 1210 | 3.3E-22 | IPR036955 |
| Gene3D | G3DSA:3.30.730.10 | AP2/ERF domain | 1026 | 1083 | 6.3E-22 | IPR036955 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 292 | 402 | 4.1E-38 | IPR013083 |
| Gene3D | G3DSA:3.30.730.10 | AP2/ERF domain | 901 | 958 | 1.2E-23 | IPR036955 |
| SMART | SM00380 | rav1_2 | 901 | 962 | 5.6E-29 | IPR001471 |
| SMART | SM00380 | rav1_2 | 1378 | 1439 | 2.2E-31 | IPR001471 |
| SMART | SM00380 | rav1_2 | 1280 | 1341 | 1.1E-22 | IPR001471 |
| SMART | SM00380 | rav1_2 | 1026 | 1087 | 2.1E-24 | IPR001471 |
| SMART | SM00380 | rav1_2 | 1153 | 1214 | 6.3E-25 | IPR001471 |
| ProSiteProfiles | PS51032 | AP2/ERF domain profile. | 1378 | 1433 | 21.11381 | IPR001471 |
| ProSiteProfiles | PS51044 | Zinc finger SP-RING-type profile. | 305 | 382 | 41.320782 | IPR004181 |
| ProSiteProfiles | PS51032 | AP2/ERF domain profile. | 1280 | 1335 | 19.901636 | IPR001471 |
| ProSiteProfiles | PS51032 | AP2/ERF domain profile. | 1026 | 1081 | 20.270557 | IPR001471 |
| ProSiteProfiles | PS51032 | AP2/ERF domain profile. | 1153 | 1208 | 19.835756 | IPR001471 |
| ProSiteProfiles | PS51032 | AP2/ERF domain profile. | 901 | 956 | 20.79759 | IPR001471 |
| PRINTS | PR00367 | Ethylene responsive element binding protein signature | 1154 | 1165 | 2.0E-10 | IPR001471 |
| PRINTS | PR00367 | Ethylene responsive element binding protein signature | 1190 | 1210 | 2.0E-10 | IPR001471 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 407 | 459 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 599 | 645 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1343 | 1389 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 957 | 984 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1343 | 1368 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 841 | 895 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 445 | 459 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 426 | 444 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 839 | 903 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 960 | 984 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G41580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_031249571.1 | LOW QUALITY PROTEIN: E4 SUMO-protein ligase PIAL2 [Pistacia vera] | 0 |
| F4JYG0 | E4 SUMO-protein ligase PIAL2 OS=Arabidopsis thaliana OX=3702 GN=PIAL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P5YAU7 | E4 SUMO-protein ligase PIAL2-like isoform X2 OS=Durio zibethinus OX=66656 GN=LOC111290470 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg23503, jg23504, jg23505, jg7665 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14703 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004548 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g099780 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg23947, Sbi_jg7772 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12251 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00001130, GOSA_00001131 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl52121, Sgl57390 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004715, gene:ENSEOMG00000024019 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0006690, CQ.Regalona.r1.5BG0006970 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30135330 |
| Apiaceae | Apium graveolens | 3 | Ag5G01044, Ag7G00162, Ag9G02776 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G012330, COCNU_14G002070 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103709002, gene-LOC103710882 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_05.650.V1.1, AsparagusV1_06.1420.V1.1 ... |
| Asteraceae | Flaveria trinervia | 4 | Ftri13G02349, Ftri15G04516, Ftri3G16700, Ftri7G11976 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G08910.1, AT5G41580.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10007035m.g.v1.0, Thhalv10027658m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g07530.v2.2, Sp7g00460.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g024830.2N, BniB02g004510.2N, BniB03g003000.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0267 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0316 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g12180 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g16730, gene.Thate09g06650 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG10.1462, evm.TU.LG10.1463 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00005274, Pov_00028366 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G08295, Lb4G22008, Lb4G22072 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.364, BH06.481, CH06.481 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5AG0389310 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0655510.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_028446 |
| Poaceae | Oryza coarctata | 2 | Oco11G003040, Oco12G002990 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g06870.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G054300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0402079, Pt_Chr0402115 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr04G014810, Chr11G022190, Chr14G002310, Chr19G011080 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G264700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG014780, gene_TRIDC7BG004030 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G126400.2, TraesCS7B02G025700.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb375680_P002 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-36651, nbis-gene-5104, nbis-gene-5105 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g25003, Zma_g29157 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG04.3322, evm.TU.LG10.455, evm.TU.LG16.275 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g22820, gene.Posoc09g07930 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18251, nbisL1-mrna-22379 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4409 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20353 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.410 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014312 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3550 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6716 |
| Salicaceae | Populus euphratica | 1 | populus_peu34461 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609914 |
| Solanaceae | Solanum chilense | 1 | SOLCI005109000 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107008392, gene-LOC107025269, gene-LOC107028827 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14758 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3190 |
| Zosteraceae | Zostera marina | 2 | Zosma04g03260.v3.1, Zosma05g03750.v3.1 |