halophFGD

Basic Information

Locus ID: evm.TU.LG10.1448

Species & Taxonomic ID: Nitraria sibirica & 357931

Genome Assembly:

Description: Plectin/S10 domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG10	26537459	26539318	-	evm.TU.LG10.1448

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.77	19,956.28 Da	51.02	53.42	-0.78

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF03501	Plectin/S10 domain	3	94	2.2E-42	IPR005326
Gene3D	G3DSA:1.10.10.10	-	1	104	1.3E-46	IPR036388
MobiDBLite	mobidb-lite	consensus disorder prediction	114	130	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	93	181	-	-

KEGG Pathway

KO Term:

K02947 (small subunit ribosomal protein S10e)

Pathway:

ko03010 (Ribosome) map03010 (Ribosome)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G25740.1	RNA binding Plectin/S10 domain-containing protein.
RefSeq	XP_010055689.3	40S ribosomal protein S10-1 [Eucalyptus grandis]
Swiss-Prot	Q9SW09	Small ribosomal subunit protein eS10z OS=Arabidopsis thaliana OX=3702 GN=RPS10A PE=1 SV=1
TrEMBL	A0A059C1U1	S10_plectin domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_E00655 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg13947
Aizoaceae	Mesembryanthemum crystallinum	2	gene_14711, gene_3245
Amaranthaceae	Atriplex hortensis	2	Ah004562, Ah030279
Amaranthaceae	Beta vulgaris	2	BVRB_3g053340, BVRB_5g099980
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg38456, Sbi_jg4818, Sbi_jg6566, Sbi_jg7267
Amaranthaceae	Salicornia europaea	2	Seu_jg12744, Seu_jg15356
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00006455
Amaranthaceae	Suaeda glauca	4	Sgl01888, Sgl07066, Sgl65209, Sgl69623
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000005631, gene:ENSEOMG00000006835 ... gene:ENSEOMG00000020512, gene:ENSEOMG00000023609, gene:ENSEOMG00000036563, gene:ENSEOMG00000040007
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.5BG0007120, CQ.Regalona.r1.7AG0022800 ... CQ.Regalona.r1.7BG0025400
Anacardiaceae	Pistacia vera	2	pistato.v30135470, pistato.v30183580
Apiaceae	Apium graveolens	2	Ag10G02583, Ag3G02006
Arecaceae	Cocos nucifera	2	COCNU_01G019180, COCNU_02G010590
Arecaceae	Phoenix dactylifera	4	gene-LOC103701249, gene-LOC103703191, gene-LOC103704379 ... gene-LOC120112461
Asparagaceae	Asparagus officinalis	4	AsparagusV1_02.742.V1.1, AsparagusV1_04.378.V1.1 ... AsparagusV1_09.1109.V1.1, AsparagusV1_10.1809.V1.1
Asteraceae	Flaveria trinervia	3	Ftri18G20885, Ftri4G24507, Ftri8G03980
Brassicaceae	Arabidopsis thaliana	3	AT4G25740.1, AT5G41520.1, AT5G52650.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10014804m.g.v1.0, Thhalv10026365m.g.v1.0 ... Thhalv10027958m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp6g14820.v2.2, Sp7g23770.v2.2
Brassicaceae	Brassica nigra	9	BniB01g024880.2N, BniB02g030350.2N, BniB02g082100.2N ... BniB03g012670.2N, BniB05g011620.2N, BniB05g032220.2N, BniB05g034520.2N, BniB06g059210.2N, BniB08g017210.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G0286, Ceq09G1486
Casuarinaceae	Casuarina glauca	3	Cgl03G0332, Cgl03G0369, Cgl09G1577
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno07g01280, gene.Cymno08g07800
Dunaliellaceae	Dunaliella salina	1	Dusal.0053s00007.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g14060, gene.Thate09g01640
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-1625, nbisL1-mrna-8457
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.2785, evm.TU.LG10.1448
Plantaginaceae	Plantago ovata	2	Pov_00010578, Pov_00041024
Plumbaginaceae	Limonium bicolor	3	Lb0G38044, Lb1G03924, Lb3G21086
Poaceae	Echinochloa crus-galli	6	AH02.4604, AH09.1010, BH02.4662, BH09.1082, CH02.4710 ... CH09.1215
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1AG0047510, gene-QOZ80_1BG0097440 ... gene-QOZ80_4AG0317540, gene-QOZ80_4BG0348940
Poaceae	Lolium multiflorum	2	gene-QYE76_016920, gene-QYE76_058782
Poaceae	Oryza coarctata	5	Oco01G030590, Oco02G031690, Oco04G014160, Oco07G005900 ... Oco08G005900
Poaceae	Oryza sativa	3	LOC_Os01g73160.1, LOC_Os02g34460.2, LOC_Os04g35090.1
Poaceae	Paspalum vaginatum	3	gene-BS78_03G410600, gene-BS78_03G412700 ... gene-BS78_06G095600
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0302687, Pt_Chr0302727, Pt_Chr0600869, Pt_Chr0605886
Poaceae	Sporobolus alterniflorus	8	Chr02G000530, Chr03G023800, Chr05G034250, Chr08G017930 ... Chr23G013020, Chr25G011310, Chr26G006530, Chr30G010890
Poaceae	Thinopyrum elongatum	3	Tel2E01G534300, Tel3E01G842100, Tel4E01G265900
Poaceae	Triticum dicoccoides	8	gene_TRIDC1AG048620, gene_TRIDC1BG053260 ... gene_TRIDC2AG018640, gene_TRIDC2AG043900, gene_TRIDC2BG046580, gene_TRIDC3AG072090, gene_TRIDC3BG083230, gene_TRIDC7AG004620
Poaceae	Triticum aestivum	3	TraesCS2A02G302600.1, TraesCS2B02G318500.1 ... TraesCS2D02G301300.1
Poaceae	Zea mays	7	Zm00001eb024580_P001, Zm00001eb082850_P001 ... Zm00001eb140330_P001, Zm00001eb174410_P001, Zm00001eb362490_P001, Zm00001eb402130_P001, Zm00001eb422490_P001
Poaceae	Zoysia japonica	3	nbis-gene-28090, nbis-gene-37861, nbis-gene-7670
Poaceae	Zoysia macrostachya	3	Zma_g11988, Zma_g19699, Zma_g21283
Portulacaceae	Portulaca oleracea	5	evm.TU.LG01.1438, evm.TU.LG10.494, evm.TU.LG14.1491 ... evm.TU.LG14.720, evm.TU.LG17.497
Posidoniaceae	Posidonia oceanica	2	gene.Posoc05g16800, gene.Posoc05g20370
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_11_RagTag.1436 ... evm.TU.Scaffold_16_RagTag.145
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-12731, nbisL1-mrna-22387, nbisL1-mrna-29254
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-10281, nbisL1-mrna-14436, nbisL1-mrna-5512
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-20345, nbisL1-mrna-2193, nbisL1-mrna-22446
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000008l.51, evm.TU.utg000010l.403 ... evm.TU.utg000022l.403
Rhizophoraceae	Kandelia obovata	3	Maker00000988, Maker00008667, Maker00014337
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-1111, nbisL1-mrna-2330, nbisL1-mrna-3543
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-20550, nbisL1-mrna-6311
Salicaceae	Populus euphratica	4	populus_peu09803, populus_peu13463, populus_peu15802 ... populus_peu24657
Solanaceae	Lycium barbarum	4	gene-LOC132604292, gene-LOC132609088, gene-LOC132611468 ... gene-LOC132645959
Solanaceae	Solanum chilense	2	SOLCI002319400, SOLCI006480400
Solanaceae	Solanum pennellii	2	gene-LOC107007590, gene-LOC107008029
Tamaricaceae	Reaumuria soongarica	2	gene_14765, gene_5230
Tamaricaceae	Tamarix chinensis	3	TC01G3375, TC06G2328, TC08G1541
Zosteraceae	Zostera marina	2	Zosma04g14810.v3.1, Zosma04g16410.v3.1