Basic Information
Locus ID:
evm.TU.LG10.1320
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Agamous-like MADS-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 25333496 | 25340639 | - | evm.TU.LG10.1320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.08 | 37,200.65 Da | 57.63 | 89.36 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 124 | 199 | 9.56814E-45 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 131 | 178 | 1.6E-26 | IPR002100 |
| Pfam | PF01486 | K-box region | 205 | 290 | 3.2E-26 | IPR002487 |
| SUPERFAMILY | SSF55455 | SRF-like | 124 | 196 | 6.41E-33 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 135 | 210 | 6.0E-30 | IPR036879 |
| SMART | SM00432 | madsneu2 | 122 | 181 | 1.5E-41 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 122 | 182 | 31.931215 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 206 | 296 | 14.995994 | IPR002487 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 124 | 178 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 159 | 180 | 1.3E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 144 | 159 | 1.3E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 124 | 144 | 1.3E-30 | IPR002100 |
| Coils | Coil | Coil | 269 | 289 | - | - |
| Coils | Coil | Coil | 240 | 263 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22950.1 | AGAMOUS-like 19. MADS-box protein AGL19 | 0 |
| RefSeq | XP_011033831.1 | PREDICTED: agamous-like MADS-box protein AGL19 [Populus euphratica] | 0 |
| O82743 | Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana OX=3702 GN=AGL19 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7H219 | MADS-box protein SOC1-like OS=Acer yangbiense OX=1000413 GN=EZV62_023537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology