halophFGD

Basic Information

Locus ID: evm.TU.LG10.1251

Species & Taxonomic ID: Portulaca oleracea & 46147

Genome Assembly: GWHCBIU00000000

Description: zinc finger CCCH domain-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	25153719	25157299	-	evm.TU.LG10.1251

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.03	27,050.96 Da	33.65	91.78	-0.04

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF18044	CCCH-type zinc finger	25	45	9.2E-6	IPR041367
Pfam	PF00400	WD domain, G-beta repeat	56	91	6.8E-5	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	44	157	1.02E-15	IPR036322
SUPERFAMILY	SSF90229	CCCH zinc finger	24	46	2.04E-6	IPR036855
Gene3D	G3DSA:2.130.10.10	-	35	176	1.6E-14	IPR015943
SMART	SM00320	WD40_4	94	129	130.0	IPR001680
SMART	SM00320	WD40_4	52	91	1.4E-4	IPR001680
ProSiteProfiles	PS50103	Zinc finger C3H1-type profile.	21	48	12.30498	IPR000571
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	59	100	13.482671	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	59	91	10.258324	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding) GO:0046872 (metal ion binding)

KEGG Pathway

KO Term:

K10260 (F-box and WD-40 domain protein 7)

Pathway:

ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G25440.1	zinc finger WD40 repeat protein 1.
RefSeq	XP_021765944.1	zinc finger CCCH domain-containing protein 48-like [Chenopodium quinoa]
Swiss-Prot	Q9FNZ2	Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1
TrEMBL	A0A7C9EDR3	Zinc finger CCCH domain-containing protein 48 (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg10154, jg14043, jg2340, jg29301
Aizoaceae	Mesembryanthemum crystallinum	2	gene_1388, gene_3174
Amaranthaceae	Atriplex hortensis	2	Ah018984, Ah031355
Amaranthaceae	Beta vulgaris	2	BVRB_8g191380, BVRB_8g191390
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg15485, Sbi_jg56296
Amaranthaceae	Salicornia europaea	1	Seu_jg26761
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00006608, GOSA_00008943
Amaranthaceae	Suaeda glauca	4	Sgl02069, Sgl07222, Sgl74130, Sgl77645
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000000705, gene:ENSEOMG00000004802 ... gene:ENSEOMG00000028815, gene:ENSEOMG00000040014, gene:ENSEOMG00000046367
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.3AG0002180, CQ.Regalona.r1.3BG0002300 ... CQ.Regalona.r1.7AG0021940, CQ.Regalona.r1.7BG0024510
Anacardiaceae	Pistacia vera	2	pistato.v30003610, pistato.v30182120
Apiaceae	Apium graveolens	4	Ag10G00202, Ag2G01960, Ag4G01742, Ag8G00755
Arecaceae	Cocos nucifera	2	COCNU_07G007240, scaffold000778G000030
Arecaceae	Phoenix dactylifera	1	gene-LOC103711123
Asparagaceae	Asparagus officinalis	8	AsparagusV1_01.3628.V1.1, AsparagusV1_04.2108.V1.1 ... AsparagusV1_04.2986.V1.1, AsparagusV1_04.2990.V1.1, AsparagusV1_08.2958.V1.1, AsparagusV1_09.778.V1.1, AsparagusV1_10.997.V1.1, AsparagusV1_10.998.V1.1
Asteraceae	Flaveria trinervia	4	Ftri12G31744, Ftri8G33145, Ftri9G00006, FtriNA05352
Brassicaceae	Arabidopsis thaliana	4	AT4G25440.1, AT5G40880.1, AT5G49200.1, AT5G51980.2
Brassicaceae	Eutrema salsugineum	4	Thhalv10013582m.g.v1.0, Thhalv10025269m.g.v1.0 ... Thhalv10027743m.g.v1.0, Thhalv10027745m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp6g14230.v2.2, Sp7g01600.v2.2, Sp7g23490.v2.2
Brassicaceae	Brassica nigra	8	BniB01g026530.2N, BniB01g026590.2N, BniB02g029520.2N ... BniB02g029960.2N, BniB03g040680.2N, BniB03g053290.2N, BniB05g011810.2N, BniB08g017560.2N
Casuarinaceae	Casuarina equisetifolia	16	Ceq01G1037, Ceq01G1048, Ceq01G1534, Ceq02G1793, Ceq02G2070 ... Ceq04G1031, Ceq04G1039, Ceq04G1042, Ceq04G1051, Ceq05G2127, Ceq08G1499, Ceq08G1617, Ceq08G1639, Ceq08G1643, Ceq08G1752, Ceq09G1260
Casuarinaceae	Casuarina glauca	21	Cgl01G1150, Cgl01G1209, Cgl01G1220, Cgl01G1699, Cgl02G1853 ... Cgl02G1865, Cgl02G2141, Cgl04G1117, Cgl04G1171, Cgl04G1180, Cgl05G2188, Cgl05G2190, Cgl05G2209, Cgl08G1478, Cgl08G1531, Cgl08G1656, Cgl08G1680, Cgl08G1683, Cgl08G1690, Cgl08G1788, Cgl09G1348
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno14g01870, gene.Cymno14g01880
Dunaliellaceae	Dunaliella salina	1	Dusal.0698s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate03g11440, gene.Thate08g03670, gene.Thate08g03720
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG01.2214, evm.TU.LG04.955, evm.TU.LG04.961 ... evm.TU.LG04.963, evm.TU.LG04.964
Plantaginaceae	Plantago ovata	5	Pov_00019507, Pov_00028600, Pov_00028769, Pov_00035026 ... Pov_00040895
Plumbaginaceae	Limonium bicolor	2	Lb1G04398, Lb1G04431
Poaceae	Echinochloa crus-galli	9	AH01.5287, AH02.353, AH05.3464, AH07.2993, BH02.379 ... BH07.2816, CH01.5523, CH02.418, CH07.2896
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1BG0061370, gene-QOZ80_1BG0061390 ... gene-QOZ80_2AG0140780, gene-QOZ80_2BG0196390
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.3HG0236950.1, HORVU.MOREX.r3.6HG0603760.2 ... HORVU.MOREX.r3.4HG0407530.1.CDS1
Poaceae	Lolium multiflorum	8	gene-QYE76_000717, gene-QYE76_008723, gene-QYE76_024346 ... gene-QYE76_048188, gene-QYE76_050198, gene-QYE76_050733, gene-QYE76_068993, gene-QYE76_070820
Poaceae	Oryza coarctata	6	Oco01G003770, Oco02G003840, Oco03G018100, Oco04G018850 ... Oco05G002780, Oco06G002760
Poaceae	Oryza sativa	5	LOC_Os01g09252.1, LOC_Os02g45480.1, LOC_Os03g05210.1 ... LOC_Os03g05250.1, LOC_Os04g48375.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G034600, gene-BS78_04G240500
Poaceae	Puccinellia tenuiflora	9	Pt_Chr0100064, Pt_Chr0100084, Pt_Chr0200021, Pt_Chr0203712 ... Pt_Chr0206594, Pt_Chr0403282, Pt_Chr0405571, Pt_Chr0603331, Pt_Chr0700307
Poaceae	Sporobolus alterniflorus	7	Chr02G020610, Chr03G006120, Chr03G006130, Chr03G006140 ... Chr06G005140, Chr09G023570, Chr15G006720
Poaceae	Thinopyrum elongatum	3	Tel3E01G189800, Tel4E01G515900, Tel6E01G478600
Poaceae	Triticum dicoccoides	6	gene_TRIDC3AG013470, gene_TRIDC3BG018020 ... gene_TRIDC4AG055630, gene_TRIDC4BG052810, gene_TRIDC6AG039630, gene_TRIDC6BG046540
Poaceae	Triticum aestivum	8	TraesCS3A02G109600.1, TraesCS3D02G111400.1 ... TraesCS4A02G410400.1.cds1, TraesCS4B02G310500.1.cds1, TraesCS4D02G308400.1.cds1, TraesCS6A02G257200.1, TraesCS6B02G267900.1, TraesCS6D02G238400.3
Poaceae	Zea mays	3	Zm00001eb088450_P001, Zm00001eb121510_P001 ... Zm00001eb250580_P003
Poaceae	Zoysia japonica	5	nbis-gene-22274, nbis-gene-36001, nbis-gene-6562 ... nbis-gene-6565, nbis-gene-9161
Poaceae	Zoysia macrostachya	4	Zma_g10203, Zma_g10204, Zma_g14121, Zma_g16871
Portulacaceae	Portulaca oleracea	8	evm.TU.LG03.578, evm.TU.LG10.1251, evm.TU.LG11.1581 ... evm.TU.LG12.1152, evm.TU.LG19.1212, evm.TU.LG24.1214, evm.TU.LG25.760, evm.TU.LG26.856
Posidoniaceae	Posidonia oceanica	1	gene.Posoc06g07270
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_11_RagTag.1326, evm.TU.Scaffold_4_RagTag.173 ... evm.TU.Scaffold_14_RagTag.542, evm.TU.Scaffold_1_RagTag.1170, evm.TU.Scaffold_2_RagTag.1165
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-12632, nbisL1-mrna-17811, nbisL1-mrna-29176 ... nbisL1-mrna-6450
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-12959, nbisL1-mrna-16215, nbisL1-mrna-1726 ... nbisL1-mrna-6824
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-18829, nbisL1-mrna-2117, nbisL1-mrna-8204 ... nbisL1-mrna-8206
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000007l.38, add.evm.TU.utg000010l.145 ... evm.TU.utg000008l.104, evm.TU.utg000016l.804
Rhizophoraceae	Kandelia obovata	3	Maker00000881, Maker00009084, Maker00017327
Rhizophoraceae	Rhizophora apiculata	6	nbisL1-mrna-1044, nbisL1-mrna-10988, nbisL1-mrna-12431 ... nbisL1-mrna-23325, nbisL1-mrna-23326, nbisL1-mrna-2383
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-10569, nbisL1-mrna-13369, nbisL1-mrna-20635 ... nbisL1-mrna-5561, nbisL1-mrna-6234
Salicaceae	Populus euphratica	4	populus_peu27762, populus_peu29225, populus_peu30584 ... populus_peu34079
Solanaceae	Lycium barbarum	1	gene-LOC132631818
Solanaceae	Solanum pennellii	1	gene-LOC107015414
Tamaricaceae	Reaumuria soongarica	3	gene_15775, gene_15850, gene_5194
Tamaricaceae	Tamarix chinensis	5	TC06G1729, TC09G2144, TC09G2145, TC09G2148, TC09G2149
Zosteraceae	Zostera marina	1	Zosma03g26430.v3.1