Basic Information
Locus ID:
evm.TU.LG10.1168
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 23782249 | 23791111 | - | evm.TU.LG10.1168 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.73 | 60,094.47 Da | 49.02 | 86.48 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00125 | Core histone H2A/H2B/H3/H4 | 1 | 101 | 4.7E-32 | IPR007125 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 155 | 530 | 1.79E-19 | IPR036322 |
| SUPERFAMILY | SSF47113 | Histone-fold | 2 | 102 | 1.88E-36 | IPR009072 |
| Gene3D | G3DSA:2.130.10.10 | - | 197 | 531 | 4.9E-16 | IPR015943 |
| Gene3D | G3DSA:1.10.20.10 | Histone, subunit A | 2 | 116 | 1.7E-49 | IPR009072 |
| SMART | SM00428 | h35 | 34 | 137 | 4.8E-34 | IPR000164 |
| SMART | SM00320 | WD40_4 | 143 | 182 | 94.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 300 | 340 | 5.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 255 | 296 | 18.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 493 | 532 | 110.0 | IPR001680 |
| ProSitePatterns | PS00322 | Histone H3 signature 1. | 15 | 21 | - | IPR000164 |
| ProSitePatterns | PS00959 | Histone H3 signature 2. | 67 | 75 | - | IPR000164 |
| PRINTS | PR00622 | Histone H3 signature | 80 | 98 | 4.8E-56 | IPR000164 |
| PRINTS | PR00622 | Histone H3 signature | 34 | 55 | 4.8E-56 | IPR000164 |
| PRINTS | PR00622 | Histone H3 signature | 17 | 31 | 4.8E-56 | IPR000164 |
| PRINTS | PR00622 | Histone H3 signature | 3 | 17 | 4.8E-56 | IPR000164 |
| PRINTS | PR00622 | Histone H3 signature | 58 | 75 | 4.8E-56 | IPR000164 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G12920.5 | - | 0 |
| RefSeq | XP_042958475.1 | uncharacterized protein LOC122294084 [Carya illinoinensis] | 0 |
| P59226 | Histone H3.1 OS=Arabidopsis thaliana OX=3702 GN=HTR2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X8APK0 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_000135 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg16286 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11665 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004947 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g072170 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17934, Sbi_jg62565 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg1141 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007097 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl23910, Sgl29079, Sgl74432, Sgl77986 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000009251, gene:ENSEOMG00000043193 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0001020, CQ.Regalona.r1.4BG0001150 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30052270 |
| Apiaceae | Apium graveolens | 1 | Ag5G02714 |
| Arecaceae | Cocos nucifera | 1 | scaffold000339G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103711385, gene-LOC120107781 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.3333.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G23724 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G12920.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015483m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g31040.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g006000.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G2026 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1999 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g06110 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0375s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g08230 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG09.294, evm.TU.LG09.295, evm.TU.LG10.1168 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015047 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb7G33194, Lb7G33196 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.2415, BH07.2231, CH07.2299 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0135840, gene-QOZ80_2BG0191370 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0589950.2 |
| Poaceae | Oryza coarctata | 3 | Oco03G014010, Oco04G014400, Oco04G015620 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g37856.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G179200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0100744, Pt_Chr0204400 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G012960, Chr13G008830 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G400900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG031290, gene_TRIDC6BG037740 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G205100.1, TraesCS6B02G225500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb245730_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-29788 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13791 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1791, evm.TU.LG20.107 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g10730 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.1074 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29948 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3563 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16439 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015714 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4548 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20727 |
| Salicaceae | Populus euphratica | 1 | populus_peu04356 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644062 |
| Solanaceae | Solanum chilense | 1 | SOLCI002849000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003228 |
| Zosteraceae | Zostera marina | 1 | Zosma03g07580.v3.1 |