Basic Information
Locus ID:
evm.TU.LG10.1158
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 22886496 | 22889227 | + | evm.TU.LG10.1158 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.59 | 60,825.05 Da | 40.59 | 79.57 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 219 | 347 | 3.36571E-37 | IPR033734 |
| CDD | cd09612 | Jacalin | 393 | 525 | 8.43406E-46 | IPR033734 |
| CDD | cd09612 | Jacalin | 14 | 143 | 3.88078E-43 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 14 | 145 | 1.6E-32 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 393 | 525 | 4.9E-36 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 219 | 347 | 1.7E-27 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 208 | 347 | 9.03E-35 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 4 | 145 | 2.88E-41 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 382 | 524 | 2.09E-44 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 373 | 525 | 2.8E-51 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 1 | 144 | 4.4E-52 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 200 | 347 | 4.3E-44 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 393 | 526 | 3.7E-46 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 14 | 145 | 8.5E-41 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 219 | 349 | 1.7E-32 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 3 | 145 | 48.901089 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 382 | 526 | 51.33968 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 208 | 349 | 41.200764 | IPR001229 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.1 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_021846285.1 | jacalin-related lectin 3-like isoform X1 [Spinacia oleracea] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9DXH2 | Jacalin-type lectin domain-containing protein OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology