Basic Information
Locus ID:
evm.TU.LG10.1080
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 22713174 | 22714513 | - | evm.TU.LG10.1080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.72 | 39,478.52 Da | 45.30 | 73.42 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 292 | 332 | 2.2E-6 | IPR002893 |
| SUPERFAMILY | SSF81901 | HCP-like | 89 | 200 | 4.45E-12 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 14 | 68 | 6.93E-8 | IPR036047 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 289 | 336 | 7.15E-10 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 280 | 336 | 7.8E-10 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 55 | 222 | 4.1E-17 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 290 | 332 | 11.11871 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 239 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 233 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_021905789.1 | F-box protein At5g50450-like [Carica papaya] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P6BGG5 | F-box protein At1g67340-like OS=Durio zibethinus OX=66656 GN=LOC111317925 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology