Basic Information
Locus ID:
evm.TU.LG10.103
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Peptidyl-prolyl cis-trans isomerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG10 | 5584610 | 5586628 | - | evm.TU.LG10.103 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.85 | 28,607.98 Da | 48.66 | 76.92 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00254 | FKBP-type peptidyl-prolyl cis-trans isomerase | 156 | 258 | 1.5E-17 | IPR001179 |
| SUPERFAMILY | SSF54534 | FKBP-like | 84 | 260 | 1.04E-25 | - |
| Gene3D | G3DSA:3.10.50.40 | - | 111 | 264 | 7.5E-26 | - |
| ProSiteProfiles | PS50059 | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 160 | 262 | 17.872465 | IPR001179 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 82 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 82 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18170.1 | FKBP-like peptidyl-prolyl cis-trans isomerase family protein. | 0 |
| RefSeq | XP_031261733.1 | peptidyl-prolyl cis-trans isomerase FKBP17-2, chloroplastic-like [Pistacia vera] | 0 |
| Q9LDY5 | Peptidyl-prolyl cis-trans isomerase FKBP17-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FKBP17-2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5D3BLH2 | peptidylprolyl isomerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002320 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19721 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah007283 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg36074, Sbi_jg458 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4194 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009787 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl25560, Sgl30711 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000029549, gene:ENSEOMG00000043018 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0012730, CQ.Regalona.r1.4BG0014880 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30150080, pistato.v30292130 |
| Apiaceae | Apium graveolens | 1 | Ag3G00779 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G010870 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721396 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.3691.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G08194 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G18170.1, AT1G73655.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008547m.g.v1.0, Thhalv10019056m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g28830.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g027930.2N, BniB03g038800.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2842 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2995 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g01850 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0314s00019.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g05250 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5540 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.103 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G22610 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.875, BH01.1017, CH01.1065 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0219400, gene-QOZ80_3BG0264670 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0336820.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_062854 |
| Poaceae | Oryza coarctata | 2 | Oco05G021420, Oco06G022220 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g50080.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G109100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0104776, Pt_Chr0502648 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr12G030200 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G079300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG042120, gene_TRIDC4BG006840 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G270400.1, TraesCS4B02G043700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb216540_P001, Zm00001eb235390_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-14797, nbis-gene-15897 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g2970 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2241, evm.TU.LG14.1414 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g31130 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.720 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14383, nbisL1-mrna-19591 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12340 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000061l.11 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-941 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8398 |
| Salicaceae | Populus euphratica | 1 | populus_peu29724 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633249 |
| Solanaceae | Solanum chilense | 1 | SOLCI003030700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014283 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.17120_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G1020 |
| Zosteraceae | Zostera marina | 1 | Zosma01g15100.v3.1 |