Basic Information
Locus ID:
evm.TU.LG09.981
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 31475006 | 31478336 | + | evm.TU.LG09.981 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 49,181.74 Da | 46.53 | 75.98 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 28 | 338 | 0.0 | - |
| Pfam | PF00850 | Histone deacetylase domain | 42 | 336 | 3.6E-87 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 23 | 389 | 1.15E-124 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 13 | 403 | 7.7E-138 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 10 | 438 | 3.2E-205 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 273 | 283 | 3.0E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 188 | 203 | 3.0E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 156 | 179 | 3.0E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 44 | 61 | 2.9E-61 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 77 | 95 | 2.9E-61 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 251 | 269 | 2.9E-61 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 175 | 191 | 2.9E-61 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 134 | 154 | 2.9E-61 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 234 | 247 | 2.9E-61 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 113 | 130 | 2.9E-61 | IPR003084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 396 | 440 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 413 | 440 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_021762854.1 | histone deacetylase 6-like [Chenopodium quinoa] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RE39 | Histone deacetylase OS=Spinacia oleracea OX=3562 GN=SOVF_077050 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology