Basic Information
Locus ID:
evm.TU.LG09.933
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
F-box associated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 30756393 | 30759075 | + | evm.TU.LG09.933 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.01 | 44,047.46 Da | 46.43 | 86.91 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 10 | 50 | 6.8E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 9 | 76 | 3.4E-14 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 49 | 1.7E-9 | - |
| SMART | SM00256 | fbox_2 | 10 | 50 | 8.1E-11 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 116 | 340 | 2.2E-12 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 4 | 50 | 12.252887 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06240.1 | F-box family protein. | 0 |
| RefSeq | XP_014497978.1 | F-box/kelch-repeat protein At3g23880-like [Vigna radiata var. radiata] | 0 |
| Q8GXC7 | F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana OX=3702 GN=At3g06240 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1S3TW26 | F-box/kelch-repeat protein At3g23880-like OS=Vigna radiata var. radiata OX=3916 GN=LOC111240483 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 7 | gene_13562, gene_18928, gene_18929, gene_19416, gene_4730 ... |
| Amaranthaceae | Atriplex hortensis | 7 | Ah000401, Ah001137, Ah001139, Ah014368, Ah028400, Ah028402 ... |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30749, Sbi_jg58515 |
| Amaranthaceae | Salicornia europaea | 5 | Seu_jg20870, Seu_jg28387, Seu_jg28388, Seu_jg28403 ... |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000010129 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5BG0023560, CQ.Regalona.r1.8BG0020740 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.1040, evm.TU.LG09.933 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644015 |