Basic Information
Locus ID:
evm.TU.LG09.923
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG09 | 24015293 | 24032326 | - | evm.TU.LG09.923 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.55 | 172,387.20 Da | 40.27 | 77.07 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02440 | AdoMet_MTases | 1294 | 1348 | 3.06958E-6 | - |
| Pfam | PF01344 | Kelch motif | 172 | 217 | 6.3E-8 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 220 | 265 | 5.1E-7 | IPR006652 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 599 | 632 | 9.5E-10 | - |
| Pfam | PF13847 | Methyltransferase domain | 1292 | 1350 | 4.4E-9 | IPR025714 |
| Pfam | PF00642 | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 789 | 816 | 8.8E-6 | IPR000571 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 880 | 940 | 6.9E-5 | IPR000504 |
| Pfam | PF05958 | tRNA (Uracil-5-)-methyltransferase | 1446 | 1497 | 1.6E-7 | IPR010280 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 996 | 1562 | 6.09E-49 | IPR029063 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 786 | 821 | 8.01E-7 | IPR036855 |
| SUPERFAMILY | SSF57850 | RING/U-box | 600 | 634 | 3.8E-5 | - |
| SUPERFAMILY | SSF117281 | Kelch motif | 102 | 341 | 5.89E-42 | IPR015915 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 879 | 954 | 2.74E-8 | IPR035979 |
| Gene3D | G3DSA:2.120.10.80 | - | 91 | 366 | 5.4E-37 | IPR015915 |
| Gene3D | G3DSA:3.30.70.330 | - | 876 | 944 | 8.6E-7 | IPR012677 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 586 | 647 | 6.2E-10 | IPR013083 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 1237 | 1561 | 1.7E-65 | - |
| Gene3D | G3DSA:4.10.1000.10 | - | 781 | 821 | 7.5E-12 | - |
| SMART | SM00612 | kelc_smart | 184 | 231 | 1.4E-5 | IPR006652 |
| SMART | SM00612 | kelc_smart | 232 | 284 | 0.52 | IPR006652 |
| SMART | SM00356 | c3hfinal6 | 788 | 816 | 9.7E-5 | IPR000571 |
| ProSiteProfiles | PS51687 | SAM-dependent methyltransferase RNA m(5)U-type domain profile. | 993 | 1562 | 46.467869 | IPR010280 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 788 | 817 | 14.840037 | IPR000571 |
| ProSitePatterns | PS01230 | RNA methyltransferase trmA family signature 1. | 1457 | 1489 | - | IPR030390 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 728 | 785 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 728 | 763 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1361 | 1445 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 829 | 849 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 764 | 781 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1409 | 1427 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 964 | 990 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1361 | 1408 | - | - |
| Coils | Coil | Coil | 1003 | 1023 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28450.1 | zinc finger (CCCH-type) family protein. | 0 |
| RefSeq | XP_031247333.1 | zinc finger CCCH domain-containing protein 24 [Pistacia vera] | 0 |
| Q8L7S3 | Zinc finger CCCH domain-containing protein 24 OS=Arabidopsis thaliana OX=3702 GN=At2g28450 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2H5NDS2 | RING-type E3 ubiquitin transferase OS=Citrus unshiu OX=55188 GN=CUMW_035940 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg35872 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20859 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah037774 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g208060 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg41873, Sbi_jg48254 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27595 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019765 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl22058, Sgl27336, Sgl78570, Sgl81054 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000016164, gene:ENSEOMG00000016348 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0004940, CQ.Regalona.r1.9BG0017370 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30058730 |
| Apiaceae | Apium graveolens | 4 | Ag2G00954, AgUnG00514, AgUnG01597, AgUnG01598 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G000100 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708402 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.21.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G31703 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G28450.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016347m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g11270.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g017450.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1718 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1758 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g04020 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g06300 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.923 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014650 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G32392 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.31, BH09.106, CH09.76 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0328510, gene-QOZ80_4BG0360510 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0100410.2 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_038082, gene-QYE76_038083 |
| Poaceae | Oryza coarctata | 1 | Oco08G000150 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g01480.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G004200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0305932, Pt_Chr0306000 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G019170, Chr25G016790, Chr26G000780, Chr30G014600 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G096800 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC2BG004730 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G039200.1, TraesCS2B02G051800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb089580_P001, Zm00001eb418880_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-46845 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19214 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2197, evm.TU.LG23.431 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g00040 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.713 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-30333 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19756 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16094 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.413 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015772 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4332 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15083 |
| Salicaceae | Populus euphratica | 1 | populus_peu35491 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600428 |
| Solanaceae | Solanum chilense | 1 | SOLCI004152300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004810 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14615 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2749 |
| Zosteraceae | Zostera marina | 1 | Zosma01g38900.v3.1 |