Basic Information
Locus ID:
evm.TU.LG09.83
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 3133883 | 3141248 | + | evm.TU.LG09.83 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 92,672.37 Da | 50.25 | 79.36 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 559 | 651 | 1.91598E-11 | - |
| Pfam | PF03018 | Dirigent-like protein | 2 | 94 | 9.3E-29 | IPR004265 |
| Pfam | PF03732 | Retrotransposon gag protein | 229 | 322 | 6.7E-16 | IPR005162 |
| Gene3D | G3DSA:2.40.480.10 | - | 1 | 131 | 1.3E-9 | IPR044859 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 535 | 678 | 4.1E-22 | IPR021109 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 465 | 484 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 149 | - | - |
| Coils | Coil | Coil | 376 | 396 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21100.1 | Disease resistance-responsive (dirigent-like protein) family protein. | 0 |
| RefSeq | XP_020272240.1 | uncharacterized protein LOC109847422 [Asparagus officinalis] | 0 |
| Q84TH6 | Dirigent protein 23 OS=Arabidopsis thaliana OX=3702 GN=DIR23 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J0ZX64 | LOW QUALITY PROTEIN: uncharacterized protein LOC110412945 OS=Herrania umbratica OX=108875 GN=LOC110412945 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12571, gene_15568 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg55472, Sbi_jg8972 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120107363 |
| Asteraceae | Flaveria trinervia | 4 | Ftri10G03390, Ftri12G31698, Ftri2G11694, FtriNA14812 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g09880 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G00264, Lb3G20497, Lb4G25704 |
| Poaceae | Echinochloa crus-galli | 4 | AH03.1315, CH03.1969, CH05.577, CH08.1150 |
| Poaceae | Eleusine coracana subsp. coracana | 35 | gene-QOZ80_1AG0019390, gene-QOZ80_1BG0066180 ... |
| Poaceae | Oryza sativa | 2 | ChrUn.fgenesh.mRNA.3, LOC_Os10g04210.1 |
| Poaceae | Paspalum vaginatum | 16 | gene-BS78_01G262700, gene-BS78_02G095400, gene-BS78_K070500 ... |
| Poaceae | Sporobolus alterniflorus | 8 | Chr01G020320, Chr09G007960, Chr10G004130, Chr20G010620 ... |
| Poaceae | Zoysia japonica | 11 | nbis-gene-1312, nbis-gene-27882, nbis-gene-27898 ... |
| Portulacaceae | Portulaca oleracea | 10 | evm.TU.LG03.1598, evm.TU.LG09.83, evm.TU.LG12.179 ... |
| Solanaceae | Lycium barbarum | 13 | gene-LOC132607653, gene-LOC132607841, gene-LOC132607949 ... |