Basic Information
Locus ID:
evm.TU.LG09.826
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG09 | 22257817 | 22261895 | + | evm.TU.LG09.826 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.10 | 37,497.94 Da | 47.61 | 66.50 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 71 | 152 | 2.3E-18 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 254 | 312 | 1.3E-26 | IPR039512 |
| Pfam | PF13445 | RING-type zinc-finger | 207 | 247 | 1.5E-7 | IPR027370 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 143 | 200 | 8.37E-19 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 68 | 142 | 1.22E-16 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 206 | 256 | 1.69E-9 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 278 | 321 | 3.8E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 193 | 262 | 3.8E-10 | IPR013083 |
| SMART | SM00184 | ring_2 | 207 | 249 | 6.4E-7 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 142 | 206 | 34.992832 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 207 | 250 | 11.677863 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 64 | 140 | 25.366974 | IPR008913 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_031261160.1 | E3 ubiquitin-protein ligase RZFP34 [Pistacia vera] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7IYT7 | RING-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_002351 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology