Basic Information
Locus ID:
evm.TU.LG09.773
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG09 | 21265940 | 21283424 | - | evm.TU.LG09.773 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.27 | 122,168.61 Da | 45.50 | 86.47 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 344 | 657 | 8.92176E-94 | - |
| CDD | cd16449 | RING-HC | 791 | 830 | 2.52095E-13 | - |
| CDD | cd18793 | SF2_C_SNF | 857 | 984 | 1.9755E-60 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 788 | 836 | 4.4E-10 | - |
| Pfam | PF08797 | HIRAN domain | 112 | 220 | 9.4E-17 | IPR014905 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 347 | 736 | 4.5E-87 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 861 | 973 | 8.0E-15 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 669 | 1010 | 1.75E-60 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 777 | 837 | 1.32E-15 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 329 | 657 | 3.54E-52 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 401 | 669 | 4.4E-54 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 673 | 1047 | 1.7E-69 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 769 | 846 | 2.4E-15 | IPR013083 |
| SMART | SM00487 | ultradead3 | 340 | 638 | 8.2E-29 | IPR014001 |
| SMART | SM00490 | helicmild6 | 890 | 973 | 4.1E-17 | IPR001650 |
| SMART | SM00184 | ring_2 | 791 | 830 | 9.1E-9 | IPR001841 |
| SMART | SM00910 | HIRAN_2 | 111 | 224 | 4.4E-14 | IPR014905 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 861 | 1015 | 13.805292 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 402 | 619 | 18.990786 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 791 | 831 | 12.563043 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 806 | 815 | - | IPR017907 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22750.1 | DNA/RNA helicase protein. DNA repair gene. gamma-radiation hypersensitive (RAD5) involved in stable transformation and T-DNA transfer | 0 |
| RefSeq | XP_006424354.1 | DNA repair protein RAD5A [Citrus clementina] | 0 |
| Q9FNI6 | DNA repair protein RAD5A OS=Arabidopsis thaliana OX=3702 GN=RAD5A PE=1 SV=1 | 0 | |
| TrEMBL | V4UE68 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 OS=Citrus clementina OX=85681 GN=CICLE_v10027736mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg12680, jg37578 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26046 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah011488 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_2g027880, BVRB_9g210900 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg11904, Sbi_jg29552, Sbi_jg46848, Sbi_jg46849 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21145 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009472 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl80320, Sgl80324, Sgl82779, Sgl82787 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000017001, gene:ENSEOMG00000039893 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0010630, CQ.Regalona.r1.9BG0011800 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30057260 |
| Apiaceae | Apium graveolens | 2 | Ag11G04353, Ag8G01493 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G009490, COCNU_07G010310 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103723832, gene-LOC120103925 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.1582.V1.1, AsparagusV1_04.1812.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri2G27081, Ftri7G30610 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT5G22750.1, AT5G43530.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012547m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g22670.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g060930.2N, BniB08g011360.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1716 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1718 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno08g08900, gene.Cymno10g09730 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g16530, gene.Thate08g15910 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.773 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00015868, Pov_00025474 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb2G10487, Lb3G19588, Lb3G19592, Lb3G19593 |
| Poaceae | Echinochloa crus-galli | 6 | AH07.2015, AH09.343, BH07.1980, BH09.417, CH07.1835 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_2AG0132610, gene-QOZ80_2BG0188000 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0103780.1, HORVU.MOREX.r3.6HG0559070.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_022658, gene-QYE76_032802 |
| Poaceae | Oryza coarctata | 3 | Oco03G011410, Oco04G011820, Oco08G001430 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G149100, gene-BS78_06G039700 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0200888, Pt_Chr0402389, Pt_Chr0402391 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr06G010750, Chr09G015400, Chr13G011320, Chr15G012340 ... |
| Poaceae | Thinopyrum elongatum | 5 | Tel2E01G161800, Tel2E01G482200, Tel2E01G482400 ... |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG008140, gene_TRIDC2BG009670 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G072700.1, TraesCS2B02G086700.1 ... |
| Poaceae | Zea mays | 6 | Zm00001eb176980_P001, Zm00001eb181290_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-20844, nbis-gene-32198 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13607, Zma_g20980 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.1570, evm.TU.LG15.1558 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc05g23090, gene.Posoc06g09790 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_13_RagTag.450, evm.TU.Scaffold_3_RagTag.1255 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-1579, nbisL1-mrna-30673 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3072 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-22079, nbisL1-mrna-2512 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.255 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015843 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-4142, nbisL1-mrna-6225, nbisL1-mrna-6226 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1952, nbisL1-mrna-22181 |
| Salicaceae | Populus euphratica | 3 | populus_peu08553, populus_peu21518, populus_peu33950 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132600517, gene-LOC132617999 |
| Solanaceae | Solanum chilense | 1 | SOLCI004834700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002900, gene-LOC107012600 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_4212, gene_9526 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1862 |
| Zosteraceae | Zostera marina | 1 | Zosma05g30940.v3.1 |