Basic Information
Locus ID:
evm.TU.LG09.715
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
PAPA-1-like family protein zinc finger (HIT type) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 26374755 | 26389615 | + | evm.TU.LG09.715 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.03 | 86,305.17 Da | 51.23 | 65.85 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 443 | 526 | 4.0E-18 | IPR006880 |
| Pfam | PF04438 | HIT zinc finger | 543 | 574 | 2.2E-7 | IPR007529 |
| SMART | SM01406 | PAPA_1_2 | 442 | 527 | 9.3E-28 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 433 | 500 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 96 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 370 | 391 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 297 | 329 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 222 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 500 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 175 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 124 | - | - |
| Coils | Coil | Coil | 453 | 473 | - | - |
| Coils | Coil | Coil | 480 | 502 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47350.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_021768735.1 | uncharacterized protein LOC110733032 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A7C9AMZ1 | PAPA-1 domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology