Basic Information
Locus ID:
evm.TU.LG09.569
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG09 | 14406283 | 14407464 | + | evm.TU.LG09.569 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.43 | 44,889.25 Da | 43.33 | 106.64 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 1 | 60 | 3.8E-11 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1 | 65 | 6.18E-16 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 98 | 354 | 3.77E-6 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 66 | 7.7E-18 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 80 | 375 | 9.5E-9 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 1 | 57 | 5.6E-15 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 1 | 64 | 26.388489 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_006494890.1 | E3 ubiquitin-protein ligase PUB23-like [Citrus sinensis] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2H5QDL9 | RING-type E3 ubiquitin transferase OS=Citrus unshiu OX=55188 GN=CUMW_216910 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology