Basic Information
Locus ID:
evm.TU.LG09.568
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG09 | 14055846 | 14057084 | + | evm.TU.LG09.568 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.38 | 46,146.31 Da | 49.96 | 112.57 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 10 | 53 | 1.76492E-20 | - |
| Pfam | PF04564 | U-box domain | 6 | 77 | 3.4E-17 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 99 | 376 | 5.76E-17 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 83 | 4.39E-26 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 81 | 1.2E-26 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 85 | 392 | 1.8E-17 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 9 | 73 | 2.7E-28 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 5 | 80 | 35.428795 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52450.1 | plant U-box 22. Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_031268973.1 | E3 ubiquitin-protein ligase PUB23-like [Pistacia vera] | 0 |
| Q9SVC6 | E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana OX=3702 GN=PUB22 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J0ZV48 | RING-type E3 ubiquitin transferase OS=Herrania umbratica OX=108875 GN=LOC110412368 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology