Basic Information
Locus ID:
evm.TU.LG09.493
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 20373556 | 20383646 | - | evm.TU.LG09.493 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.83 | 97,283.38 Da | 48.72 | 96.27 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 402 | 441 | 9.4E-5 | IPR001810 |
| Pfam | PF03478 | Protein of unknown function (DUF295) | 322 | 360 | 5.7E-5 | IPR005174 |
| Pfam | PF12937 | F-box-like | 27 | 65 | 2.1E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 26 | 91 | 1.57E-7 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 402 | 477 | 3.79E-5 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 26 | 67 | 1.6E-6 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 398 | 444 | 2.6E-5 | - |
| SMART | SM00256 | fbox_2 | 406 | 447 | 0.033 | IPR001810 |
| SMART | SM00256 | fbox_2 | 30 | 72 | 0.028 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 24 | 72 | 9.497469 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021852731.1 | uncharacterized protein LOC110792224 [Spinacia oleracea] | 0 |
| TrEMBL | A0A0K9QC74 | DUF295 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_195540 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_16244, gene_21745, gene_21763, gene_26530 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah008814, Ah008815, Ah008816, Ah008817 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g076820, BVRB_9g224050 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg50516 |
| Amaranthaceae | Suaeda glauca | 12 | Sgl23194, Sgl23396, Sgl23397, Sgl23398, Sgl28512, Sgl28513 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.3AG0013410, CQ.Regalona.r1.3AG0025460 ... |
| Portulacaceae | Portulaca oleracea | 10 | evm.TU.LG02.1509, evm.TU.LG02.1510, evm.TU.LG02.1512 ... |