Basic Information
Locus ID:
evm.TU.LG09.452
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG09 | 9361571 | 9363712 | - | evm.TU.LG09.452 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.02 | 18,349.89 Da | 47.01 | 83.13 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 8 | 106 | 1.8E-39 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 107 | 144 | 1.0E-9 | - |
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_031259787.1 | LOW QUALITY PROTEIN: DNA (cytosine-5)-methyltransferase CMT3 [Pistacia vera] | 0 |
| Q94F88 | DNA (cytosine-5)-methyltransferase CMT3 OS=Arabidopsis thaliana OX=3702 GN=CMT3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6A6KDP8 | Cytosine-specific methyltransferase OS=Hevea brasiliensis OX=3981 GN=GH714_013067 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology