Basic Information
Locus ID:
evm.TU.LG09.349
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 14874815 | 14875556 | + | evm.TU.LG09.349 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.05 | 24,763.75 Da | 56.28 | 84.40 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 164 | 208 | 1.7E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 163 | 213 | 5.74E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 145 | 214 | 4.1E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 164 | 207 | 6.6E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 164 | 208 | 11.766381 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 81 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_006284708.1 | RING-H2 finger protein ATL18 [Capsella rubella] | 0 |
| TrEMBL | R0F7P8 | RING-type domain-containing protein OS=Capsella rubella OX=81985 GN=CARUB_v10005966mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Brassica nigra | 1 | BniB02g014130.2N |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG09.349 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-11222, nbisL1-mrna-11223, nbisL1-mrna-11227 ... |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10588, nbisL1-mrna-6105 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000006l.50 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20387 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7095 |