Basic Information
Locus ID:
evm.TU.LG09.32
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
emb1379 emb1379 (embryo defective 1379)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG09 | 493116 | 502905 | + | evm.TU.LG09.32 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.88 | 57,606.44 Da | 46.22 | 91.04 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16493 | RING-CH-C4HC3_NSE1 | 409 | 457 | 2.28656E-13 | IPR014857 |
| Pfam | PF08746 | RING-like domain | 410 | 455 | 7.6E-8 | IPR014857 |
| Pfam | PF07574 | Nse1 non-SMC component of SMC5-6 complex | 216 | 398 | 3.8E-43 | IPR011513 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 409 | 470 | 1.1E-12 | IPR013083 |
| Gene3D | G3DSA:1.10.10.10 | - | 292 | 406 | 1.6E-21 | IPR036388 |
| Gene3D | G3DSA:3.90.1150.220 | - | 213 | 289 | 6.9E-11 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 476 | 497 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 508 | 531 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 531 | - | - |
Gene Ontology
Biological Process:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G21140.1 | embryo defective 1379. | 0 |
| RefSeq | XP_031254747.1 | non-structural maintenance of chromosomes element 1 homolog [Pistacia vera] | 0 |
| TrEMBL | A0A1R3J9I7 | Non-structural maintenance of chromosomes element 1 homolog OS=Corchorus olitorius OX=93759 GN=COLO4_18366 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg16393, jg37657 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6889 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027809 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_7g171810, BVRB_8g187140 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1522, Sbi_jg35024 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3223 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003400 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl72658, Sgl76196 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006545, gene:ENSEOMG00000039726 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0004760, CQ.Regalona.r1.9BG0001020 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30054670 |
| Apiaceae | Apium graveolens | 2 | Ag1G01048, Ag9G01505 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G015920, COCNU_12G005390 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103704987, gene-LOC103709053, gene-LOC103719243 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G26707 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G21070.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014597m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g23450.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g041800.2N, BniB05g042560.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1475 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1474 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g05900 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g09120, gene.Thate02g10310 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.32 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015748 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G19235 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0003680, gene-QOZ80_1BG0052090 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0257500.1 |
| Poaceae | Oryza coarctata | 2 | Oco01G007920, Oco02G008210 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g17020.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G120200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0603824 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G027190, Chr03G001070, Chr05G004890, Chr08G004080 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G325200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG026420, gene_TRIDC3BG030120 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G189800.1, TraesCS3B02G218900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb128960_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-24467, nbis-gene-32550 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g7323, Zma_g9654 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.1070, evm.TU.LG24.1073 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc07g11050, gene.Posoc10g08220 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.471, evm.TU.Scaffold_13_RagTag.594 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24278, nbisL1-mrna-30473 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12914, nbisL1-mrna-16496 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-15979, nbisL1-mrna-19729 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000015l.324, evm.TU.utg000027l.281 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015952, Maker00018157 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-4243, nbisL1-mrna-5704 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11951, nbisL1-mrna-15198 |
| Salicaceae | Populus euphratica | 2 | populus_peu08495, populus_peu36850 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132600715, gene-LOC132626302 |
| Solanaceae | Solanum chilense | 2 | SOLCI004209400, SOLCI007463800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002885, gene-LOC107010293 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3642 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1232 |
| Zosteraceae | Zostera marina | 1 | Zosma02g03280.v3.1 |