Basic Information
Locus ID:
evm.TU.LG09.2124
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 44773326 | 44777436 | - | evm.TU.LG09.2124 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 81,385.58 Da | 36.30 | 87.17 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 359 | 658 | 2.6487E-152 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 44 | 342 | 2.13396E-163 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 364 | 654 | 2.4E-26 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 43 | 342 | 6.54E-41 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 359 | 658 | 1.23E-39 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 43 | 341 | 1.4E-32 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 357 | 658 | 5.3E-45 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 359 | 659 | 33.509281 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 44 | 343 | 32.201942 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_021759066.1 | glycerophosphodiester phosphodiesterase GDPDL3-like [Chenopodium quinoa] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A7C9AT96 | glycerophosphodiester phosphodiesterase OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology