Basic Information
Locus ID:
evm.TU.LG09.1894
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 42343428 | 42348809 | + | evm.TU.LG09.1894 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 95,961.74 Da | 44.48 | 81.01 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 637 | 675 | 5.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 724 | 759 | 6.9E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 551 | 861 | 1.07E-52 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 90 | 345 | 1.19E-19 | IPR011009 |
| Gene3D | G3DSA:2.130.10.10 | - | 528 | 864 | 1.8E-120 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 93 | 339 | 7.9E-26 | - |
| SMART | SM00320 | WD40_4 | 818 | 862 | 120.0 | IPR001680 |
| SMART | SM00220 | serkin_6 | 25 | 330 | 1.9E-4 | IPR000719 |
| SMART | SM00320 | WD40_4 | 768 | 807 | 3.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 721 | 759 | 3.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 593 | 632 | 19.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 547 | 582 | 0.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 635 | 675 | 2.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 678 | 717 | 0.31 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 642 | 679 | 10.390142 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 642 | 684 | 13.549507 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 728 | 761 | 12.246197 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 728 | 761 | 10.205597 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 330 | 10.859873 | IPR000719 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 746 | 760 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 619 | 633 | 6.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 746 | 760 | 6.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 662 | 676 | 6.5E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 484 | 514 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 472 | 516 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15354.3 | - | 0 |
| RefSeq | XP_010694977.2 | protein SPA1-RELATED 4 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LJR3 | Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9D531 | 2-alkenal reductase (NAD(P)(+)) OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology