Basic Information
Locus ID:
evm.TU.LG09.1841
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 41784874 | 41787499 | + | evm.TU.LG09.1841 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.84 | 28,168.37 Da | 58.62 | 77.78 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 27 | 107 | 2.2E-16 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 23 | 120 | 2.49E-25 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 15 | 124 | 4.8E-24 | IPR036431 |
| SMART | SM01014 | ARID_2 | 20 | 107 | 1.5E-23 | - |
| SMART | SM00501 | bright_3 | 24 | 112 | 1.9E-24 | IPR001606 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 23 | 111 | 24.498909 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 257 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55650.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_021752741.1 | high mobility group B protein 10-like isoform X2 [Chenopodium quinoa] | 0 |
| Q9LG02 | Putative high mobility group B protein 11 OS=Arabidopsis thaliana OX=3702 GN=HMGB11 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7C8YMR0 | ARID domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology