Basic Information
Locus ID:
evm.TU.LG09.1740
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Small ubiquitin-related modifier
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 39733193 | 39735081 | - | evm.TU.LG09.1740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.97 | 10,919.06 Da | 56.73 | 64.43 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16116 | Ubl_Smt3_like | 17 | 90 | 1.45138E-48 | - |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 19 | 89 | 1.0E-25 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 7 | 95 | 5.06E-28 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 94 | 3.0E-39 | - |
| SMART | SM00213 | ubq_7 | 19 | 90 | 2.5E-14 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 17 | 94 | 16.015017 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26840.1 | small ubiquitin-like modifier 1. Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. | 0 |
| RefSeq | XP_016746261.1 | small ubiquitin-related modifier 1 [Gossypium hirsutum] | 0 |
| P55852 | Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana OX=3702 GN=SUMO1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1U8P4W0 | Small ubiquitin-related modifier OS=Gossypium hirsutum OX=3635 GN=LOC107955063 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology