Basic Information
Locus ID:
evm.TU.LG09.1464
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 36718574 | 36719817 | + | evm.TU.LG09.1464 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.18 | 38,181.38 Da | 42.92 | 79.61 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 24 | 63 | 2.1E-6 | IPR001810 |
| Pfam | PF01753 | MYND finger | 284 | 323 | 2.3E-7 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 288 | 325 | 1.05E-9 | - |
| SUPERFAMILY | SSF81901 | HCP-like | 85 | 202 | 1.57E-11 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 16 | 79 | 5.63E-9 | IPR036047 |
| Gene3D | G3DSA:6.10.140.2220 | - | 272 | 328 | 9.7E-11 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 17 | 65 | 3.0E-6 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 66 | 221 | 2.1E-16 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 281 | 323 | 10.9113 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_016693015.2 | F-box protein At1g67340 [Gossypium hirsutum] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9AF49 | MYND-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology