Basic Information
Locus ID:
evm.TU.LG09.1293
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 34759613 | 34763254 | + | evm.TU.LG09.1293 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.45 | 43,962.36 Da | 48.90 | 89.58 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 114 | 166 | 4.2E-7 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 106 | 171 | 6.36E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 103 | 205 | 8.0E-11 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 114 | 169 | 10.069786 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 133 | 142 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 59 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 51 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G29270.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021733919.1 | uncharacterized protein LOC110700655 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803L9E5 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology