Basic Information
Locus ID:
evm.TU.LG09.1271
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG09 | 27917664 | 27925131 | + | evm.TU.LG09.1271 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 35,760.57 Da | 85.36 | 70.06 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 72 | 110 | 1.6E-9 | IPR001841 |
| Pfam | PF17123 | RING-like zinc finger | 214 | 243 | 3.1E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 73 | 110 | 1.55E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 209 | 246 | 7.66E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 179 | 268 | 3.0E-10 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 31 | 114 | 1.5E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 74 | 117 | 0.029 | IPR001841 |
| SMART | SM00184 | ring_2 | 215 | 249 | 0.13 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 215 | 268 | 8.638745 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 74 | 115 | 8.919052 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 313 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23450.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_050236922.1 | RING-H2 finger protein ATL66-like [Mercurialis annua] | 0 |
| TrEMBL | A0A445HTU2 | Putative RING-H2 finger protein ATL19 OS=Glycine soja OX=3848 GN=D0Y65_035183 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Nitrariaceae | Nitraria sibirica | 4 | evm.TU.LG07.537, evm.TU.LG09.1269, evm.TU.LG09.1270 ... |