Basic Information
Locus ID:
evm.TU.LG09.1269
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG09 | 27910886 | 27913206 | + | evm.TU.LG09.1269 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.91 | 31,046.48 Da | 56.01 | 90.45 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 211 | 256 | 1.6E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 202 | 262 | 2.87E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 188 | 265 | 1.7E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 213 | 255 | 8.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 213 | 256 | 13.182669 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00305.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_002532849.2 | E3 ubiquitin-protein ligase RING1 [Ricinus communis] | 0 |
| Q9M0C3 | RING-H2 finger protein ATL14 OS=Arabidopsis thaliana OX=3702 GN=ATL14 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5C7IXQ8 | RING-type E3 ubiquitin transferase OS=Acer yangbiense OX=1000413 GN=EZV62_002650 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Nitrariaceae | Nitraria sibirica | 4 | evm.TU.LG07.537, evm.TU.LG09.1269, evm.TU.LG09.1270 ... |