Basic Information
Locus ID:
evm.TU.LG09.1220
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Cell division cycle 20.2, cofactor of APC complex-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 34126981 | 34130124 | - | evm.TU.LG09.1220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 49,072.48 Da | 46.58 | 76.48 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 146 | 414 | 1.35894E-42 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 379 | 414 | 5.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 243 | 278 | 1.0E-6 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 164 | 219 | 2.7E-6 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 291 | 329 | 0.0077 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 135 | 414 | 8.79E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 71 | 417 | 1.5E-125 | IPR015943 |
| SMART | SM00320 | WD40_4 | 287 | 329 | 1.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 375 | 414 | 1.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 198 | 235 | 0.082 | IPR001680 |
| SMART | SM00320 | WD40_4 | 156 | 195 | 7.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 239 | 278 | 7.2E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 332 | 372 | 290.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 163 | 195 | 8.676514 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 382 | 415 | 10.416506 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 163 | 204 | 11.811761 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 246 | 287 | 14.384962 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 382 | 415 | 12.513543 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 246 | 278 | 11.708317 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 401 | 415 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_010671158.1 | cell division cycle 20.2, cofactor of APC complex [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8YCA4 | ANAPC4_WD40 domain-containing protein OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology