Basic Information
Locus ID:
evm.TU.LG09.1052
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 32358812 | 32363542 | + | evm.TU.LG09.1052 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.10 | 31,693.11 Da | 51.35 | 87.76 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 13 | 56 | 3.3E-8 | IPR001810 |
| Pfam | PF14299 | Phloem protein 2 | 100 | 279 | 8.2E-40 | IPR025886 |
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 87 | 3.27E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 5 | 56 | 1.5E-7 | - |
| SMART | SM00256 | fbox_2 | 16 | 56 | 3.9E-5 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 10 | 56 | 11.166616 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80110.1 | phloem protein 2-B11. | 0 |
| RefSeq | XP_021718953.1 | putative F-box protein PP2-B12 [Chenopodium quinoa] | 0 |
| Q949S5 | F-box protein PP2-B11 OS=Arabidopsis thaliana OX=3702 GN=PP2B11 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803L8N8 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19528 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah000637, Ah000638, Ah000640, Ah000641 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g116860 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30511, Sbi_jg58736 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28606 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014960 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55244, Sgl60504 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007243, gene:ENSEOMG00000022548 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0022820, CQ.Regalona.r1.5BG0024210 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG02.919, evm.TU.LG09.1052, evm.TU.LG26.945 |