Basic Information
Locus ID:
evm.TU.LG09.1007
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Organic cation carnitine transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG09 | 25155513 | 25167548 | + | evm.TU.LG09.1007 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.11 | 121,344.49 Da | 38.98 | 101.52 | 0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00083 | Sugar (and other) transporter | 98 | 539 | 3.6E-35 | IPR005828 |
| Pfam | PF00083 | Sugar (and other) transporter | 613 | 782 | 1.6E-28 | IPR005828 |
| Pfam | PF00083 | Sugar (and other) transporter | 948 | 1092 | 4.0E-9 | IPR005828 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 47 | 539 | 6.28E-67 | IPR036259 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 565 | 1091 | 3.53E-68 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 575 | 1095 | 9.3E-82 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 57 | 545 | 2.9E-83 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 581 | 1087 | 34.666058 | IPR020846 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 63 | 535 | 39.578991 | IPR020846 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 963 | 978 | - | IPR005829 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 410 | 425 | - | IPR005829 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 295 | 320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 828 | 851 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13050.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_006488615.2 | organic cation/carnitine transporter 7 [Citrus sinensis] | 0 |
| Q940M4 | Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OCT7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T2YFU7 | MFS domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_014933 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology