Basic Information
Locus ID:
evm.TU.LG08.980
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG08 | 12978335 | 12985339 | + | evm.TU.LG08.980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.45 | 44,917.40 Da | 42.68 | 91.14 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 260 | 307 | 7.09662E-8 | - |
| CDD | cd17039 | Ubl_ubiquitin_like | 320 | 384 | 1.30292E-7 | - |
| Pfam | PF00240 | Ubiquitin family | 326 | 384 | 1.9E-5 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 255 | 309 | 2.3E-9 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 312 | 384 | 2.76E-11 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 257 | 311 | 2.76E-11 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 250 | 309 | 3.2E-9 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 310 | 385 | 1.5E-7 | - |
| SMART | SM00213 | ubq_7 | 234 | 310 | 0.0012 | IPR000626 |
| SMART | SM00213 | ubq_7 | 318 | 386 | 0.11 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 320 | 384 | 11.442183 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 234 | 311 | 13.031787 | IPR000626 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_031273698.1 | uncharacterized protein LOC116132176 [Pistacia vera] | 0 |
| TrEMBL | A0A5C7H9I0 | PB1 domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_018894 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Nitrariaceae | Nitraria sibirica | 9 | evm.TU.LG08.1015, evm.TU.LG08.1017, evm.TU.LG08.1021 ... |